I've not personally used those PCBs for a conversion but they should work for this one.
For the PROG Board:
looking at the ROM configuration you'll want to set your jumpers on the PROG 4096B similar to how they are on Super Side Kicks 2:
https://www.mvs-scans.com/index.php/File:Super_sidekicks_2_set4_b1_front.jpg
it appears that despite the slightly different ROM config from WH2 it uses the same Jumper settings... so nothing to do there.
The Program ROM will be a 27c800
You will also need to split the decrypted V1 ROM into two files and burn that to 2x 27c160 for V1 (lower half) and V2 (upper half) (you'll need to do this no matter which donor PCB you're using)
For the CHA Board:
There shouldn't be any jumpers changes needed here.
The S-ROM is always burned to a 27c301 (aka a 27c1000 "non JEDEC", by any brand other than Marconix)
The M-ROM is oversized, you'll need to burn to a 27c040 (aka 27c4001) but you'll also need to do a wire mod to support that sized chip basically running a wire from A18 on the EPROM (Pin 31) to A18 on the NEO-ZMC chip (Pin 9). There isn't a single non-encrypted ROM board that has this trace run AFAIK so you'd need to do this on any donor PCB. I've not done this on a CHA 42G-3 but
you'll want to check that Pin 31 isn't tied to 5V or ground, on other PCBs where I've done this mod it wasn't which should make it easy. Looking at pictures of this
https://www.mvs-scans.com/index.php/World_Heroes_2 it appears that pin 31 of the M-ROM is indeed tied to +5V, so you'll want to lift that pin up before soldering it to the PCB so that it doesn't make contact with the 5V connection. this should make soldering a wire to it pretty easy though.
Finally the C-ROMs, this CHA board only supports up to 27c160 sized C-ROMs (16Mbit), and the size of the Pnyaa C-ROMs are very large (64Mbit) this means that they need to be split twice so you'll need 8x 27c160s
C1 will be split into 4ths and become C1 C3 C5 and C7
C2 will be split into 4ths and become C2 C4 C6 and C8
On a whole this should be a pretty straight forward conversion on these PCBs.