for 12V I'd create a small harness that is a 3-pin JST NH header on one side and a 2-pin molex on the other so you can plug the model 2 fan into the model 3 harness.I do have the sega model 3 harness and got my Model 3 going. I did read everything you wrote twistedsymphony, but how would I make the adapters for the +5v from the model 3 harness for model 2? I'm confused by that. Not sure which adapters I'd need or how to do it. Do I splice them on the yellow and white wires?
for the 2 additional 5V connector you have a number of different ways to solve it but the one I'd recommend is to find any unused 5V rails on the Blast Power connectors and create an additional 5V harness for Model 2. I don't own a Blast so I don't know what the blast-side of the power situation looks like.
If this is something you can't do yourself then I'd recommend contracting someone like @Lemony Vengeance to do it for you.