If you're talking about the Horizontal (Red/Blue and Vertical (Yellow/Green) then don't do this. You can't mix H and V yoke wiring. It will fry the chassis and yoke.
However, if it's some other wiring on the neck board, please provide pics for clarity. I'm not familiar with that method. I'm speculating you mean the RGB connector? If so, that's not a reliable solution, as you introduce the possibility of the PCB not outputting the correct signal.
Best method to test/fix:
1) Connect a Test Pattern Generator (TPG) to the chassis to rule out the game PCB causing this issue.
2) Test tube guns with a rejuvenator/tester.
3) Swap the neck Chroma Transistors. Swap Blue for Red or Green. Fire it back up when done. If you lose Green or Red, then it's a bad blue transistor. Replace it to fix.
Del