As Vortex mentioned back in 2023, he suggests that the chips run closer to 3.3V than the 3V they run now. I replaced both power circuits with my own custom design as well as replaced all the caps on the 2 PCBs and added more caps around the FPGAs and some of the flash memory to reduce ripple. Some cart makers use the stock no name regulator that China slapped into these carts which could be the root cause of the difference you see.
Of course, the best solution would be to use voltage translators, but that would require a whole new PCB design and we're talk about SD cart solution prices now.
When you have a cart with FPGAs and more flash than all Neo Geo carts combined, you're going to stress the system and need to have enough amps to power it all; this is most noticeable with 5V AES consoles.